NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311342_10576617

Scaffold Ga0311342_10576617


Overview

Basic Information
Taxon OID3300029955 Open in IMG/M
Scaffold IDGa0311342_10576617 Open in IMG/M
Source Dataset NameII_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F052223Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0311342_105766171F007671N/AMVTEPGPGHLGYTEADFRHIQTRAAPRPLDAPERIREFLDSYTYLDDWRLNYSIQSVHSSLQSPRITCIDGAILSYGLLELLFPETQRRLLAIHRRDPATDEECGHCVTLYWNKEGRIGAFSKSSYRGLGHRPAVFHDVESVATSYARAYITEMKFEPLYFGMTTLEEAAPD
Ga0311342_105766172F052223N/ALSESAQRGSFAYYSGNELLQLTENTTDGAEGAINAFYEAMIKHYPYTEPLVDSFIAHTKADQKLGHADVFLEMCQSIPPLTRREVNDALNVARDMAEHLLLFMDGIDTFYASFPAMPRVRCDLLSE
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